Disc 1[]
1. The Two
3. 3.3 Reunion
Disc 2[]
7. 3.7 Prelude
Disc 3[]
10. 3.10 Remnants
12. 3.12 Crossings
Disc 4[]
13. 3.13 After Six
14. 3.14 Blowback
15. 3.15 Façade
16. 3.16 Taken
Disc 5[]
17. 3.17 The Frame
18. 3.18 Unveiled
19. 3.19 Hourglass
20. 3.20 Blood Ties
Disc 6[]
21. 3.21 Legacy
Special Features[]
Animated Alias - A brief animated feature detailing a mission that Sydney undertook during her missing two years.
Deleted Scenes
Bloopers
Featurette: Burbank to Barcelona- A look at the production design.
Team Alias: Two sport related features; a special introduction filmed for Monday Night Football with Jennifer Garner and Michael Vartan encountering the Stanley Cup.
Behind scenes of how they made the season.
On Season 3, disc 5, there's a interview with J.J Abrams, Jennifer Garner and some actors from Felicity (the show Abrams and Garner met on). There's a easter egg when Jennifer Garner talks about her character this season.